The dominance of CKM-suppressed and/or one-loop transitions makes charmless hadronic B decays excellent processes to test the Standard Model (SM). Several (possible) deviations from the SM, "puzzles", have been seen in these processes; they could indicate new physics or would otherwise improve theoretical understanding. Searching for and resolving "puzzles" in charmless hadronic B decays plays an important role in heavy-flavor physics. My talk will present recent contributions from BaBar to this field, including Dalitz plot analyses of $B\to K\pi\pi$ and searches for $B\to PP$, $PV$ and $PA$, where $P$, $V$ and $A$ denotes a pseudoscalar, vector and axial-vector meson, respectively. Measurements of direct CP asymmetries will be also presented where they are available.